What are Host Compounds in Supramolecular Catalysis?
Host compounds are molecules or molecular devices that, in supramolecular catalytic systems, can bind, encapsulate, or contain substrates or multiple reactant molecules through non-covalent interactions, thereby creating a unique microenvironment to accelerate chemical reactions or enhance reaction selectivity and efficiency. They will usually have specific cavities, pockets, nanospace, or binding sites (or self-assemble to construct a cage structure) with high complementarity to the substrates, intermediates, or transition states for highly regulated catalysis.
Fig. 1 Some macrocyclic host compounds that can be used in supramolecular catalysis[1].
Main features of host compounds include:
- Non-covalent binding: hydrogen bonding, electrostatic/Coulomb, van der Waals, hydrophobic/solvophobic, π-π stacking, and cation-π/CH-π.
- Steric confinement: The host can provide a locally confined space for the substrate, intermediate, or transition state, which "fixes" or "positions" it into a favorable configuration, thus lowering the activation free energy. It also reduces the possibility of unwanted collisions and side reactions.
- Microenvironmental manipulation: polarity/non-polarity, hydrophobicity/hydrophilicity, acidity/alkalinity, metal coordination sites, electron/hole donors or acceptors, etc., to tune the reaction mechanism and selectivity.
- Reversibility and catalytic cycling: A good host catalyst should not only be able to bind substrate but also release the product after the reaction, thus allowing the catalyst to be reused for multiple catalytic cycles.
Alfa Chemistry's Diverse Host Compound Portfolio
We stock various types of known hosts, including cyclodextrins (α, β and γ), various crown ethers/macrocyclic ligands, calixarenes/pillararenes and cucurbitacins. We can also customize these hosts based on customers' requirements (chirality/polarity/metal ligand/cavity size) as well.
The purity and structure of the samples are strictly confirmed, making them suitable for high-demand experimental needs such as catalytic reaction mechanism research, transition state stability analysis, and Kinetics testing.
Mechanism of Action
Alfa Chemistry lists common mechanisms of action of host compounds in supramolecular catalysis for reference.
Mechanistic Types | Description/Key Factors |
Substrate binding and preorganization | Host molecules hold substrates in particular positions/orientations by non-covalent binding with substrate molecules, orienting the reaction center at a preferred distance/orientation for reaction. |
Effective molarity (local concentration) enhancement | The host cavity concentrates substrates, heightening the frequency of collisions of substrates or between substrates and the catalytically active site, analogous to the conversion of a bimolecular reaction to a unimolecular reaction. |
Intermediate/transition state stabilization | The host has stronger binding/complementarity to transition states or reaction intermediates, and therefore lowers activation energy. This may be done through electronic, electrostatic or polar environment modulation. |
Desolvation | The host shields the substrate or transition state from the solvent, reducing the interference or competitive binding of solvent molecules and perturbing solvation energy/entropy contributions. |
Strain/stress | The cavity may apply slight geometric/electronic stress on the substrate or particular substrate conformation, forcing it towards the transition state. This could be through deforming the cavity or "squeezing" or "stretching" the substrate conformation. |
Regio-/stereo-/enantio-selectivity | Host's spatial shape, coordination environment, substituents, or chiral auxiliary groups generate a particular product/stereoisomer preferentially. Hosts can have chiral pockets or chiral ligands inducing asymmetric catalysis. |
Fig. 2 Supramolecular iridium catalyst[2].
Typical Types and Representative Host Compounds
AlfaChemistry has compiled some common and representative host types used in supramolecular catalysis, along with their advantages, disadvantages, and applicable scenarios.
Host Types | Structural Features | Applications/Advantages |
Cyclodextrins | Torus-shaped, with a hydrophobic inner cavity and a hydrophilic outer ring with hydroxyl groups, enhancing water solubility. | Suitable for catalyzing reactions with hydrophobic substrates in aqueous or biological media; can be modified to incorporate chiral or metal coordination sites, allowing highly selective and multifunctional catalysis; advantages in drug delivery and environmental degradation reactions. |
Crown ethers | Polydentate rings coordinate oxygen atoms or similar ligands, capable of binding metal cations or organic cation substrates. | Effective for ionic reactions or transition states/intermediates that require a stable center of positive charge; commonly used in phase transfer catalysis, ion recognition, and separations; well-established structure and modifiable to suit reaction needs. |
Calyxarenes (Calix[n]arenes) | Cavity-shaped macrorings; adjustable upper and lower openings; easily accessible for metal ligand attachment or functional group introduction. | Provides an enzyme-like hydrophobic microenvironment, which can enhance the reaction rate and selectivity of hydrolysis, acid-base, or oxidation reactions; can be modified to introduce chiral or metal centers, thus expanding the scope of catalytic reactions; has excellent performance in molecular recognition, sensors, and separation materials. |
Cucurbiturils | Symmetrical structure, robust cavity, strong binding for positively charged guests; excellent binding constant. | Excellent for host-guest catalysis, transition state stabilization, and rate enhancement; applicable for reactions involving positively charged or cationic intermediates; can be used for drug delivery, molecular recognition, and highly selective catalysis. |
Pillararenes | Macrorings composed of "pillar-like" repeating units, capable of being modified on both the interior and exterior. | Suitable for the construction of multifunctional nanocavities for substrate containment and control of reaction selectivity; has potential in molecular recognition, separations, drug delivery, and host-guest catalysis; and is amenable to modular design and modification. |
Resins (Macrocyclic polyamines) | Polyvalent coordination or proton acceptance/donation capabilities, resulting in a large structure. | They can bind acidic or charged substrates or form multi-coordinate catalytic systems with metal ions. They have advantages in reactions such as hydrolysis, redox, ion transport, and environmental catalysis. Their acidity and hydrophobicity can be regulated through functional groups. |
Coordination cages (Molecular cages) | Multiple metal centers and multiple ligands self-assemble into cages or containers; the cavity can accommodate substrates; structurally tunable. | They provide a precisely tunable microenvironment to stabilize the transition state, increase the effective concentration, and induce asymmetric reactions. They can achieve efficient catalysis in a variety of organic reactions, including Diels–Alder reactions, photoreactions, and [2+2] additions. They have high designability and modularity. |
Supramolecular capsules (Nanocapsules) | Multiple host units form closed or semi-closed cavities through hydrogen bonding or other non-covalent interactions. | Can mimic the active center of enzymes, achieving acceleration and selectivity by restricting substrate conformation and enhancing local concentration. Suitable for reactions such as terpenoid cyclization, imine catalysis, and electrophilic additions. Have broad application prospects in organic synthesis, drug delivery, and environmental catalysis. |
Fig. 3 Example of a coordination cage: Nanoaggregates composed of nucleotides, amphiphilic amino acids, and Cu2+ ions, forming oxidase-mimicking copper cluster active sites and catalytic activity[3].
Advantages of Host Compounds
Host compounds offer the following advantages in supramolecular catalysis:
- High selectivity (Regio/Stereo/Enantio): Host cavity shape, ligand orientation, and chiral auxiliary groups enable precise control over substrate/transition state configurations.
- Reactivity under mild conditions: Hosts often enable reactions to proceed at lower temperatures and milder solvents because binding/localization reduces the energy/entropy burden.
- Increased substrate concentration/reaction rate: Effective concentration or substrate localization increases the frequency of collisions between the substrate and the catalytically active site.
- Biocompatibility/potential for aqueous catalysis: Hosts such as cyclodextrins, certain crown ethers, and water-soluble hosts offer advantages in biomedical or environmental catalysis.
- Tunability and modular design: Host structure (ring size, substituents, cavity polarity, metal ligand type, etc.) can be easily chemically modified to accommodate different substrates/reaction types.
Fig. 4 Proof of principle of supramolecular catalysts for hydroformylation reactions[4].
Application Areas of Host Compounds
- Organic Synthesis: including addition reactions, cyclization, redox reactions, C–H activation, rotation-stereochemistry, and enantioselective synthesis.
- Environmental Remediation: degradation of organic pollutants, hazardous dyes, catalytic conversion of water/air pollutants, or heavy metal ion binding and catalysis.
- Biomedicine: drug delivery, controlled drug release, diagnostic probes, enzyme mimics, or in vitro/in vivo catalytic reactions.
- Materials Science: molecular imprinting, functional materials (optical, electrical, catalytic, and sensor), separation materials, porous materials, and MOFs/supramolecular frameworks.
References
- Li S., et al. A mini review of supramolecular antagonists based on macrocyclic host compounds. Bioorganic Chemistry, 2024, 153, 107974.
- Tomasini M., et al. Unravelling Enzymatic Features in a Supramolecular Iridium Catalyst by Computational Calculations. Chem. Eur. J., 2022, 28, e202201970.
- Xu S., et al. A supramolecular metalloenzyme possessing robust oxidase-mimetic catalytic function. Nature Communications, 2023, 14, 4040.
- Ballester P., et al. Supramolecular Catalysis. Reference Module in Chemistry, Molecular Sciences and Chemical Engineering, 2015.
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